PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077925.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 259aa    MW: 30163.2 Da    PI: 6.4551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.83.2e-4361363128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     pGfrF Pt++el+++yL++k++g++ ++++vi+ v+iy+++PwdLp+     + +++++w+fF++r++++a+g r+nr t +gyWkatg+  ev+
  XP_011077925.1   6 PGFRFYPTEQELLSFYLHHKIKGTSADIDSVIPVVHIYDYNPWDLPQfageLCPEDSEQWFFFIPRQEREARGGRPNRLTPEGYWKATGSPGEVY 100
                     9***************************999***************645543334677************************************* PP

             NAM  94 skkgelvglkktLvfykgra.pkgektdWvmheyrl 128
                     s++++ +g kkt+vfy+gra ++g+ktdW m+ey++
  XP_011077925.1 101 SSQNHRIGQKKTMVFYEGRAnHRGRKTDWKMNEYKI 136
                     ******************761679**********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.6394165IPR003441NAC domain
SuperFamilySSF1019411.24E-455165IPR003441NAC domain
PfamPF023655.1E-226136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDAPLPGFRF YPTEQELLSF YLHHKIKGTS ADIDSVIPVV HIYDYNPWDL PQFAGELCPE  60
DSEQWFFFIP RQEREARGGR PNRLTPEGYW KATGSPGEVY SSQNHRIGQK KTMVFYEGRA  120
NHRGRKTDWK MNEYKIFVTD HGASSSSGEK LQVNEEYRLC RIYKRSRSLR AFDRRPLREE  180
AATGHQQAPV HRQEPVSELV AGDHQAAVDH QQHHHTAQAA VINDSSSGDH NTNHENNWDM  240
ATENEPLWAW EELNWFYLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-31616819168NO APICAL MERISTEM PROTEIN
1ut4_B2e-31616819168NO APICAL MERISTEM PROTEIN
1ut7_A2e-31616819168NO APICAL MERISTEM PROTEIN
1ut7_B2e-31616819168NO APICAL MERISTEM PROTEIN
3swm_A1e-31616822171NAC domain-containing protein 19
3swm_B1e-31616822171NAC domain-containing protein 19
3swm_C1e-31616822171NAC domain-containing protein 19
3swm_D1e-31616822171NAC domain-containing protein 19
3swp_A1e-31616822171NAC domain-containing protein 19
3swp_B1e-31616822171NAC domain-containing protein 19
3swp_C1e-31616822171NAC domain-containing protein 19
3swp_D1e-31616822171NAC domain-containing protein 19
4dul_A2e-31616819168NAC domain-containing protein 19
4dul_B2e-31616819168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077925.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A068UQS72e-90A0A068UQS7_COFCA; Uncharacterized protein
STRINGVIT_08s0007g02940.t016e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.26e-67NAC domain containing protein 61